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Bra008515 protein (Brassica rapa) - STRING interaction network
"Bra008515" - AT4G00240 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008515AT4G00240 (E=0.0) PLDBETA2 | PLDBETA2; phospholipase D (1450 aa)    
Predicted Functional Partners:
Bra014799
AT3G54690 (E=9e-167) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (338 aa)
       
  0.827
Bra003192
AT3G54690 (E=2e-174) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (347 aa)
       
  0.827
Bra000374
AT2G45150 (E=4e-161) | phosphatidate cytidylyltransferase family protein (632 aa)
   
 
  0.752
Bra026899
AT1G13560 (E=2e-099) AAPT1, ATAAPT1 | AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups (382 aa)
         
  0.732
Bra026519
AT3G25585 (E=5e-160) AAPT2, ATAAPT2 | AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups (384 aa)
         
  0.732
Bra025147
AT3G25585 (E=3e-199) AAPT2, ATAAPT2 | AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups (385 aa)
         
  0.732
Bra019718
AT1G13560 (E=2e-165) AAPT1, ATAAPT1 | AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups (416 aa)
         
  0.732
Bra039323
AT2G45670 (E=3e-255) | calcineurin B subunit-related (531 aa)
     
  0.727
Bra037553
AT3G18850 (E=1e-183) LPAT5 | LPAT5; acyltransferase (355 aa)
     
  0.727
Bra034650
AT3G18850 (E=2e-038) LPAT5 | LPAT5; acyltransferase (93 aa)
     
  0.727
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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