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Bra008527 protein (Brassica rapa) - STRING interaction network
"Bra008527" - AT4G00660 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008527AT4G00660 (E=2e-109) | DEAD/DEAH box helicase, putative (330 aa)    
Predicted Functional Partners:
Bra000603
AT5G49970 (E=2e-246) ATPPOX, PDX3 | ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5’-PHOSPHATE OXIDASE); pyridoxamine-phosphate oxidase (455 aa)
     
  0.979
Bra031623
AT1G08340 (E=5e-106) | rac GTPase activating protein, putative (649 aa)
     
  0.978
Bra030721
AT1G08370 (E=5e-125) DCP1, ATDCP1 | DCP1 (decapping 1); m7G(5’)pppN diphosphatase/ protein homodimerization (367 aa)
     
  0.974
Bra018630
AT1G08370 (E=1e-143) DCP1, ATDCP1 | DCP1 (decapping 1); m7G(5’)pppN diphosphatase/ protein homodimerization (362 aa)
     
  0.974
Bra025138
AT2G03870 (E=4e-045) | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (247 aa)
       
  0.972
Bra030529
AT1G03330 (E=2e-047) | small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative (93 aa)
       
  0.966
Bra009946
AT5G27720 (E=9e-051) emb1644 | emb1644 (embryo defective 1644) (129 aa)
     
  0.953
Bra009946.1-P
AT5G27720 (E=9e-051) emb1644 | emb1644 (embryo defective 1644) (129 aa)
     
  0.953
Bra037308
AT1G02080 (E=1e-193) | transcriptional regulator-related (1369 aa)
     
 
  0.943
Bra033222
AT1G02080 (E=0.0) | transcriptional regulator-related (2419 aa)
     
 
  0.943
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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