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Bra008528 protein (Brassica rapa) - STRING interaction network
"Bra008528" - AT4G00700 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008528AT4G00700 (E=0.0) | C2 domain-containing protein (995 aa)    
Predicted Functional Partners:
Bra027975
AT5G35370 (E=5e-208) | ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding (446 aa)
           
  0.531
Bra017227
AT2G36690 (E=8e-201) | oxidoreductase, 2OG-Fe(II) oxygenase family protein (367 aa)
           
  0.477
Bra020820
AT4G23260 (E=2e-250) | ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (677 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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