STRINGSTRING
Bra008529 protein (Brassica rapa) - STRING interaction network
"Bra008529" - AT4G00750 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008529AT4G00750 (E=0.0) | dehydration-responsive family protein (621 aa)    
Predicted Functional Partners:
Bra010209
AT1G33610 (E=3e-215) | protein binding (478 aa)
           
  0.581
Bra012449
AT1G69360 (E=9e-213) | unknown protein (869 aa)
           
  0.573
Bra005384
AT2G34890 (E=1e-279) | CTP synthase, putative / UTP--ammonia ligase, putative ; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen (621 aa)
           
  0.547
Bra016717
AT1G13940 (E=0.0) | unknown protein (919 aa)
           
  0.541
Bra004375
AT1G26620 (E=7e-162) | unknown protein (834 aa)
           
  0.541
Bra020231
AT5G60760 (E=2e-312) | 2-phosphoglycerate kinase-related (719 aa)
           
  0.505
Bra002454
AT5G60760 (E=0.0) | 2-phosphoglycerate kinase-related (725 aa)
           
  0.505
Bra038299
AT3G45090 (E=0.0) | 2-phosphoglycerate kinase-related (713 aa)
           
  0.483
Bra025792
AT1G20100 (E=3e-064) | unknown protein (272 aa)
           
  0.471
Bra026871
AT1G13940 (E=3e-147) | unknown protein (824 aa)
           
  0.465
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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