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Bra008536 protein (Brassica rapa) - STRING interaction network
"Bra008536" - AT4G01023 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008536AT4G01023 (E=4e-048) | zinc finger (C3HC4-type RING finger) family protein (252 aa)    
Predicted Functional Partners:
Bra030575
AT1G04510 (E=2e-207) | transducin family protein / WD-40 repeat family protein (574 aa)
       
 
  0.941
Bra021844
AT2G33340 (E=3e-236) | nucleotide binding / ubiquitin-protein ligase (442 aa)
       
 
  0.941
Bra015322
AT1G04510 (E=5e-280) | transducin family protein / WD-40 repeat family protein (522 aa)
       
 
  0.941
Bra005504
AT2G33340 (E=3e-286) | nucleotide binding / ubiquitin-protein ligase (525 aa)
       
 
  0.941
Bra030798
AT1G09770 (E=0.0) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (847 aa)
     
 
  0.916
Bra027160
AT1G09770 (E=4e-100) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (236 aa)
     
 
  0.916
Bra019993
AT1G09770 (E=0.0) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (844 aa)
     
 
  0.916
Bra019919
AT1G10580 (E=1e-303) | transducin family protein / WD-40 repeat family protein (565 aa)
       
      0.908
Bra038786
AT4G21110 (E=2e-085) | G10 family protein (145 aa)
       
      0.907
Bra020886
AT4G21110 (E=1e-085) | G10 family protein (145 aa)
       
      0.907
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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