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Bra008564 protein (Brassica rapa) - STRING interaction network
"Bra008564" - AT5G17290 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008564AT5G17290 (E=2e-160) ATG5, APG5, ATATG5 | APG5 (AUTOPHAGY 5); transporter ; Required for autophagy (335 aa)    
Predicted Functional Partners:
Bra037932
AT5G50230 (E=1e-259) | nucleotide binding (575 aa)
       
  0.997
Bra037974
AT1G54210 (E=4e-042) APG12, ATG12A | ATG12A (AUTOPHAGY 12 A); protein binding ; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation (85 aa)
       
  0.981
Bra027382
AT1G54210 (E=7e-044) APG12, ATG12A | ATG12A (AUTOPHAGY 12 A); protein binding ; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation (89 aa)
       
  0.981
Bra028689
AT5G61500 (E=8e-159) ATATG3, ATG3 | ATG3 (306 aa)
       
  0.980
Bra012950
AT5G61500 (E=5e-142) ATATG3, ATG3 | ATG3 (309 aa)
       
  0.980
Bra027383
AT1G72600 (E=6e-008) | hydroxyproline-rich glycoprotein family protein (168 aa)
       
  0.978
Bra028821
AT5G61500 (E=2e-017) ATATG3, ATG3 | ATG3 (253 aa)
       
  0.976
Bra027529
AT1G51540 (E=1e-048) | INVOLVED IN- biological_process unknown; LOCATED IN- Golgi apparatus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Galactose oxidase/kelch, beta-propeller (InterPro-IPR011043), Kelch repeat type 1 (InterPro-IPR006652), Kelch repeat type 2 (InterPro-IPR011498), Kelch related (InterPro-IPR013089), Kelch-type beta propeller (InterPro-IPR015915); BEST Arabidopsis thaliana protein match is- kelch repeat-containing protein (TAIR-AT3G27220.1); Has 1571 Blast hits to 1365 proteins in 151 species- Archae - 11; Bacteria [...] (323 aa)
       
  0.976
Bra029653
AT3G07525 (E=2e-082) ATG10, ATATG10 | ATG10 (autophagy 10); transporter/ ubiquitin activating enzyme (223 aa)
       
  0.958
Bra024070
AT4G30510 (E=4e-161) ATATG18B, ATG18B | AtATG18b (366 aa)
     
  0.920
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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