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Bra008566 protein (Brassica rapa) - STRING interaction network
"Bra008566" - AT5G17270 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008566AT5G17270 (E=0.0) | tetratricopeptide repeat (TPR)-containing protein (896 aa)    
Predicted Functional Partners:
Bra018437
AT1G10490 (E=0.0) | unknown protein (1024 aa)
     
        0.838
Bra007367
AT3G57940 (E=0.0) | unknown protein (1021 aa)
     
        0.838
Bra020985
AT4G18900 (E=3e-175) | transducin family protein / WD-40 repeat family protein (477 aa)
     
        0.832
Bra020984
AT4G18905 (E=4e-201) | transducin family protein / WD-40 repeat family protein (468 aa)
     
        0.832
Bra013360
AT4G18905 (E=9e-222) | transducin family protein / WD-40 repeat family protein (502 aa)
     
        0.832
Bra012568
AT4G18905 (E=7e-021) | transducin family protein / WD-40 repeat family protein (54 aa)
     
        0.832
Bra011610
AT4G18900 (E=9e-030) | transducin family protein / WD-40 repeat family protein (163 aa)
     
        0.832
Bra026129
AT1G15460 (E=0.0) ATBOR4, BOR4 | BOR4 (REQUIRES HIGH BORON 4); anion exchanger (1569 aa)
     
        0.830
Bra016657
AT1G15440 (E=0.0) | transducin family protein / WD-40 repeat family protein (882 aa)
     
        0.830
Bra023447
AT5G14050 (E=2e-158) | transducin family protein / WD-40 repeat family protein (466 aa)
     
        0.765
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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