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Bra008568 protein (Brassica rapa) - STRING interaction network
"Bra008568" - AT5G17250 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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Experiments
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Textmining
[Homology]
Score
Bra008568AT5G17250 (E=0.0) | catalytic/ transferase (925 aa)    
Predicted Functional Partners:
Bra018604
AT1G08750 (E=3e-198) | GPI-anchor transamidase, putative (388 aa)
     
  0.951
Bra023489
AT5G14850 (E=7e-177) | mannosyltransferase, putative (536 aa)
     
  0.949
Bra002215
AT5G19130 (E=0.0) | GPI transamidase component family protein / Gaa1-like family protein (695 aa)
     
  0.948
Bra026734
AT1G16040 (E=3e-091) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- GPI anchor biosynthetic process; LOCATED IN- integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- GPI biosynthesis protein Pig-F (InterPro-IPR009580); Has 210 Blast hits to 210 proteins in 94 species- Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 80; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink). (232 aa)
       
  0.947
Bra026083
AT1G16040 (E=3e-089) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- GPI anchor biosynthetic process; LOCATED IN- integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- GPI biosynthesis protein Pig-F (InterPro-IPR009580); Has 210 Blast hits to 210 proteins in 94 species- Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 80; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink). (231 aa)
       
  0.947
Bra016643
AT1G16040 (E=7e-084) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- GPI anchor biosynthetic process; LOCATED IN- integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- GPI biosynthesis protein Pig-F (InterPro-IPR009580); Has 210 Blast hits to 210 proteins in 94 species- Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 80; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink). (231 aa)
       
  0.947
Bra026998
AT1G63110 (E=4e-212) | cell division cycle protein-related (477 aa)
     
  0.947
Bra029625
AT3G07140 (E=4e-291) | GPI transamidase component Gpi16 subunit family protein (637 aa)
     
  0.943
Bra029630
AT3G07180 (E=3e-268) | GPI transamidase component PIG-S-related (603 aa)
     
  0.939
Bra037978
AT1G55090 (E=0.0) | carbon-nitrogen hydrolase family protein (742 aa)
   
 
    0.873
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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