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Bra008569 protein (Brassica rapa) - STRING interaction network
"Bra008569" - AT5G17230 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008569AT5G17230 (E=4e-202) PSY | phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase (425 aa)    
Predicted Functional Partners:
Bra032770
AT4G14210 (E=8e-310) PDS3, PDS, PDE226 | PDS3 (PHYTOENE DESATURASE 3); phytoene dehydrogenase (563 aa)
 
 
  0.983
Bra011709
AT4G36810 (E=1e-164) GGPS1 | GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1); farnesyltranstransferase (363 aa)
   
  0.980
Bra022156
AT5G47770 (E=6e-190) FPS1 | FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase (342 aa)
   
  0.974
Bra028096
AT2G18620 (E=2e-155) | geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative (359 aa)
   
  0.973
Bra035042
AT1G78510 (E=3e-183) SPS1 | SPS1 (solanesyl diphosphate synthase 1); trans-octaprenyltranstransferase (419 aa)
   
  0.968
Bra026006
AT1G17050 (E=2e-192) SPS2 | SPS2 (Solanesyl diphosphate synthase 2); trans-octaprenyltranstransferase (424 aa)
   
  0.968
Bra011898
AT4G38460 (E=2e-138) GGR | GGR (geranylgeranyl reductase); farnesyltranstransferase (322 aa)
   
  0.957
Bra022947
AT2G33630 (E=8e-258) | 3-beta hydroxysteroid dehydrogenase/isomerase family protein (480 aa)
     
 
  0.944
Bra015743
AT2G33630 (E=6e-104) | 3-beta hydroxysteroid dehydrogenase/isomerase family protein (472 aa)
     
 
  0.944
Bra015621
AT1G47290 (E=2e-204) AT3BETAHSD/D1 | AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1); 3-beta-hydroxy-delta5-steroid dehydrogenase/ sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) (432 aa)
     
 
  0.944
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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