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Bra008583 protein (Brassica rapa) - STRING interaction network
"Bra008583" - AT5G16910 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008583AT5G16910 (E=0.0) ATCSLD2, CSLD2 | CSLD2 (CELLULOSE-SYNTHASE LIKE D2); cellulose synthase/ transferase, transferring glycosyl groups (1143 aa)    
Predicted Functional Partners:
Bra022440
AT3G19620 (E=1e-244) | glycosyl hydrolase family 3 protein (771 aa)
         
  0.922
Bra026355
AT4G27370 (E=0.0) VIIIB, ATVIIIB | VIIIB; motor (1244 aa)
   
  0.695
Bra017025
AT2G40180 (E=1e-129) ATHPP2C5 | ATHPP2C5; catalytic/ protein serine/threonine phosphatase (564 aa)
   
 
  0.641
Bra041099
Uncharacterized protein (698 aa)
         
  0.629
Bra023631
AT5G17680 (E=0.0) | disease resistance protein (TIR-NBS-LRR class), putative (1437 aa)
       
  0.583
Bra004709
AT2G42580 (E=3e-140) TTL3, VIT | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); binding / protein binding (657 aa)
         
  0.551
Bra037782
AT5G64570 (E=0.0) XYL4, ATBXL4 | XYL4; hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (776 aa)
         
  0.549
Bra033337
AT1G02640 (E=0.0) BXL2, ATBXL2 | BXL2 (BETA-XYLOSIDASE 2); hydrolase, hydrolyzing O-glycosyl compounds (762 aa)
         
  0.549
Bra031912
AT5G64570 (E=0.0) XYL4, ATBXL4 | XYL4; hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (778 aa)
         
  0.549
Bra024311
AT5G64570 (E=0.0) XYL4, ATBXL4 | XYL4; hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (780 aa)
         
  0.549
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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