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Bra008588 protein (Brassica rapa) - STRING interaction network
"Bra008588" - AT5G16850 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008588AT5G16850 (E=0.0) ATTERT | ATTERT (TELOMERASE REVERSE TRANSCRIPTASE); telomerase/ telomeric template RNA reverse transcriptase (1165 aa)    
Predicted Functional Partners:
Bra026012
AT1G16970 (E=1e-299) KU70, ATKU70 | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG); double-stranded DNA binding / protein binding (577 aa)
     
  0.975
Bra022873
AT2G31970 (E=0.0) RAD50, ATRAD50 | RAD50; ATP binding / nuclease/ zinc ion binding (1282 aa)
     
 
  0.950
Bra019530
AT3G48190 (E=0.0) ATM, ATATM | ATM (ATAXIA-TELANGIECTASIA MUTATED); 1-phosphatidylinositol-3-phosphate 5-kinase (2957 aa)
       
 
  0.946
Bra018079
AT3G48190 (E=2e-250) ATM, ATATM | ATM (ATAXIA-TELANGIECTASIA MUTATED); 1-phosphatidylinositol-3-phosphate 5-kinase (893 aa)
       
 
  0.946
Bra020039
AT5G19400 (E=2e-310) SMG7 | SMG7 (1036 aa)
     
  0.921
Bra002233
AT5G19400 (E=5e-290) SMG7 | SMG7 (1071 aa)
     
  0.921
Bra014100
AT1G48050 (E=0.0) KU80, ATKU80 | KU80; double-stranded DNA binding / protein binding ; Single-stranded DNA-dependent ATP-dependent helicase (682 aa)
     
  0.916
Bra033149
AT3G57150 (E=6e-167) NAP57, AtNAP57, CBF5, AtCBF5 | NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase (547 aa)
       
  0.886
Bra008756
AT5G14460 (E=2e-220) | pseudouridine synthase/ transporter (522 aa)
       
  0.886
Bra003270
AT3G57150 (E=2e-218) NAP57, AtNAP57, CBF5, AtCBF5 | NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase (547 aa)
       
  0.886
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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