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Bra008589 protein (Brassica rapa) - STRING interaction network
"Bra008589" - AT5G16840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008589AT5G16840 (E=2e-111) BPA1 | BPA1 (BINDINGPARTNEROFACD11 1); nucleic acid binding / nucleotide binding / oxidoreductase (262 aa)    
Predicted Functional Partners:
Bra019445
AT3G43230 (E=2e-162) | zinc finger (FYVE type) family protein (640 aa)
       
      0.894
Bra027406
AT3G13720 (E=1e-062) PRA1.F3, PRA8 | PRA8 (181 aa)
       
 
  0.824
Bra014355
AT1G55190 (E=4e-082) PRA1.F2, PRA7 | PRA7 (189 aa)
       
 
  0.795
Bra014481
AT3G60600 (E=1e-103) VAP27-1, VAP, (AT)VAP, VAP27 | VAP (VESICLE ASSOCIATED PROTEIN); protein binding (239 aa)
     
 
  0.652
Bra007547
AT3G60600 (E=3e-107) VAP27-1, VAP, (AT)VAP, VAP27 | VAP (VESICLE ASSOCIATED PROTEIN); protein binding (238 aa)
     
 
  0.652
Bra003423
AT3G60600 (E=2e-108) VAP27-1, VAP, (AT)VAP, VAP27 | VAP (VESICLE ASSOCIATED PROTEIN); protein binding (240 aa)
     
 
  0.652
Bra022985
AT2G34690 (E=3e-067) ACD11 | ACD11 (ACCELERATED CELL DEATH 11); sphingosine transmembrane transporter (148 aa)
       
 
  0.631
Bra002620
AT5G58750 (E=1e-201) | wound-responsive protein-related (386 aa)
       
 
  0.628
Bra022038
AT2G34690 (E=1e-057) ACD11 | ACD11 (ACCELERATED CELL DEATH 11); sphingosine transmembrane transporter (197 aa)
       
 
  0.627
Bra032337
AT1G29800 (E=3e-254) | phosphoinositide binding / zinc ion binding (601 aa)
       
      0.612
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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