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Bra008595 protein (Brassica rapa) - STRING interaction network
"Bra008595" - AT5G16780 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008595AT5G16780 (E=2e-269) DOT2, MDF | DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2) (812 aa)    
Predicted Functional Partners:
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
       
  0.995
Bra016955
AT2G41020 (E=1e-190) | WW domain-containing protein (799 aa)
     
  0.993
Bra023834
AT5G42300 (E=6e-038) UBL5 | UBL5 (UBIQUITIN-LIKE PROTEIN 5) (73 aa)
       
 
  0.989
Bra031522
AT1G60170 (E=4e-222) emb1220 | emb1220 (embryo defective 1220) (486 aa)
     
  0.987
Bra026149
AT1G60170 (E=3e-156) emb1220 | emb1220 (embryo defective 1220) (484 aa)
     
  0.987
Bra030529
AT1G03330 (E=2e-047) | small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative (93 aa)
       
  0.983
Bra025138
AT2G03870 (E=4e-045) | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (247 aa)
       
  0.983
Bra005605
AT2G32600 (E=2e-111) | hydroxyproline-rich glycoprotein family protein (276 aa)
       
  0.981
Bra034571
AT4G03430 (E=4e-285) STA1, EMB2770 | EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism (962 aa)
     
  0.981
Bra034208
AT4G03430 (E=0.0) STA1, EMB2770 | EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism (1015 aa)
     
  0.981
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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