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Bra008599 protein (Brassica rapa) - STRING interaction network
"Bra008599" - AT2G03140 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008599AT2G03140 (E=0.0) | CAAX amino terminal protease family protein (1841 aa)    
Predicted Functional Partners:
Bra017249
AT3G52760 (E=4e-015) | integral membrane Yip1 family protein (108 aa)
       
      0.571
Bra005285
AT2G36300 (E=2e-089) | integral membrane Yip1 family protein (256 aa)
       
      0.571
Bra031496
AT1G60600 (E=9e-155) ABC4 | ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4); 1,4-dihydroxy-2-naphthoate octaprenyltransferase/ prenyltransferase (376 aa)
   
        0.555
Bra006584
AT5G20890 (E=2e-288) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (748 aa)
              0.551
Bra041146
AT1G30520 (E=1e-111) AAE14 | AAE14 (Acyl-Activating Enzyme 14); AMP binding / o-succinylbenzoate-CoA ligase (237 aa)
         
  0.524
Bra039743
AT1G66120 (E=2e-268) | acyl-activating enzyme 11 (AAE11) (579 aa)
         
  0.524
Bra038189
AT1G65890 (E=1e-277) AAE12 | AAE12 (ACYL ACTIVATING ENZYME 12); catalytic (584 aa)
         
  0.524
Bra037198
AT1G20480 (E=2e-038) | 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein (187 aa)
         
  0.524
Bra036646
AT1G62940 (E=1e-268) ACOS5 | ACOS5 (ACYL-COA SYNTHETASE 5); 4-coumarate-CoA ligase/ long-chain-fatty-acid-CoA ligase/ medium-chain-fatty-acid-CoA ligase (1479 aa)
         
  0.524
Bra032398
AT1G30520 (E=9e-277) AAE14 | AAE14 (Acyl-Activating Enzyme 14); AMP binding / o-succinylbenzoate-CoA ligase (560 aa)
         
  0.524
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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