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Bra008600 protein (Brassica rapa) - STRING interaction network
"Bra008600" - AT5G16730 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008600AT5G16730 (E=7e-233) | LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Spectrin/alpha-actinin (InterPro-IPR018159); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G02930.1); Has 241703 Blast hits to 112530 proteins in 2711 species- Archae - 2642; Bacteria - 41887; Metazoa - 104467; Fungi - 18239; Plants - 8786; Viruses - 1373; Other Eukaryotes - 64309 (source- NCBI BLink). (818 aa)    
Predicted Functional Partners:
Bra040311
AT2G45420 (E=1e-084) LBD18 | LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18) (259 aa)
           
  0.531
Bra039752
AT1G66160 (E=1e-162) ATCMPG1, CMPG1 | U-box domain-containing protein (422 aa)
           
  0.531
Bra025442
AT5G37490 (E=1e-181) | U-box domain-containing protein (438 aa)
           
  0.531
Bra004910
AT2G45420 (E=2e-079) LBD18 | LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18) (253 aa)
           
  0.531
Bra040322
AT2G45190 (E=8e-107) AFO, FIL, YAB1 | AFO (ABNORMAL FLORAL ORGANS); protein binding / transcription factor/ transcription regulator (233 aa)
           
  0.477
Bra003309
AT2G45190 (E=4e-105) AFO, FIL, YAB1 | AFO (ABNORMAL FLORAL ORGANS); protein binding / transcription factor/ transcription regulator (210 aa)
           
  0.477
Bra037323
AT4G00220 (E=3e-085) LBD30, JLO | JLO (JAGGED LATERAL ORGANS) (224 aa)
           
  0.455
Bra008514
AT4G00220 (E=2e-080) LBD30, JLO | JLO (JAGGED LATERAL ORGANS) (224 aa)
           
  0.455
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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