STRINGSTRING
Bra008601 protein (Brassica rapa) - STRING interaction network
"Bra008601" - AT5G16720 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008601AT5G16720 (E=6e-121) | unknown protein (690 aa)    
Predicted Functional Partners:
Bra025509
AT5G41310 (E=0.0) | kinesin motor protein-related (977 aa)
           
  0.666
Bra027652
AT1G63640 (E=0.0) | kinesin motor protein-related (1064 aa)
           
  0.584
Bra004451
AT2G47500 (E=3e-239) | ATP binding / microtubule motor (938 aa)
           
  0.573
Bra027797
AT1G63640 (E=0.0) | kinesin motor protein-related (1087 aa)
           
  0.483
Bra006561
AT5G20490 (E=0.0) XIK, ATXIK, XI-17 | XIK; motor/ protein binding (1537 aa)
       
 
  0.462
Bra018356
AT2G29890 (E=0.0) VLN1, ATVLN1 | VLN1 (VILLIN-LIKE 1); actin binding / actin filament binding (897 aa)
     
   
  0.418
Bra008966
AT5G11390 (E=3e-138) | unknown protein (656 aa)
           
  0.416
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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