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Bra008607 protein (Brassica rapa) - STRING interaction network
"Bra008607" - AT5G16650 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008607AT5G16650 (E=2e-055) | DNAJ heat shock N-terminal domain-containing protein (112 aa)    
Predicted Functional Partners:
Bra038496
AT4G16660 (E=0.0) | heat shock protein 70, putative / HSP70, putative (846 aa)
 
  0.925
Bra012696
AT4G16660 (E=0.0) | heat shock protein 70, putative / HSP70, putative (869 aa)
 
  0.923
Bra031657
AT1G09080 (E=0.0) BIP3 | BIP3; ATP binding (673 aa)
 
  0.910
Bra015047
AT5G42020 (E=0.0) BIP, BIP2 | BIP2; ATP binding (666 aa)
 
  0.909
Bra028521
AT5G42020 (E=0.0) BIP, BIP2 | BIP2; ATP binding (665 aa)
 
  0.909
Bra022819
AT5G42020 (E=0.0) BIP, BIP2 | BIP2; ATP binding (669 aa)
 
  0.909
Bra023110
AT5G42020 (E=4e-289) BIP, BIP2 | BIP2; ATP binding (642 aa)
 
  0.908
Bra004709
AT2G42580 (E=3e-140) TTL3, VIT | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); binding / protein binding (657 aa)
   
  0.906
Bra024699
AT5G02500 (E=8e-263) HSC70-1, HSP70-1, AT-HSC70-1, HSC70 | HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1); ATP binding (584 aa)
 
  0.904
Bra035470
AT5G02500 (E=6e-191) HSC70-1, HSP70-1, AT-HSC70-1, HSC70 | HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1); ATP binding (596 aa)
 
  0.904
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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