STRINGSTRING
Bra008611 protein (Brassica rapa) - STRING interaction network
"Bra008611" - AT5G16590 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008611AT5G16590 (E=1e-250) LRR1 | LRR1; ATP binding / kinase/ protein serine/threonine kinase (617 aa)    
Predicted Functional Partners:
Bra036818
AT3G51310 (E=0.0) VPS35C | VPS35C (VPS35 HOMOLOG C) ; Plays a role in vesicular protein sorting (793 aa)
       
      0.504
Bra025258
AT3G27210 (E=6e-052) | unknown protein (201 aa)
       
      0.504
Bra002216
AT5G19140 (E=5e-124) ATAILP1, AILP1 | AILP1 (236 aa)
       
      0.504
Bra000003
AT2G37480 (E=1e-064) | unknown protein (189 aa)
       
      0.504
Bra021286
AT3G17950 (E=8e-068) | unknown protein (212 aa)
       
      0.418
Bra009093
AT5G05190 (E=2e-121) | unknown protein (575 aa)
       
      0.418
Bra005847
AT5G05190 (E=4e-109) | unknown protein (665 aa)
       
      0.418
Bra001691
AT3G17950 (E=1e-063) | unknown protein (206 aa)
       
      0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]