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Bra008613 protein (Brassica rapa) - STRING interaction network
"Bra008613" - AT5G16560 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008613AT5G16560 (E=3e-106) KAN, KAN1 | KAN (KANADI); transcription factor (291 aa)    
Predicted Functional Partners:
Bra032394
AT1G30490 (E=0.0) PHV, ATHB9 | PHV (PHAVOLUTA); DNA binding / protein binding / transcription factor (840 aa)
           
  0.606
Bra005398
AT2G34710 (E=0.0) PHB, ATHB14, ATHB-14, PHB-1D | PHB (PHABULOSA); DNA binding / transcription factor (849 aa)
           
  0.606
Bra002458
AT5G60690 (E=0.0) REV, IFL, IFL1 | REV (REVOLUTA); DNA binding / lipid binding / transcription factor (850 aa)
           
  0.583
Bra040322
AT2G45190 (E=8e-107) AFO, FIL, YAB1 | AFO (ABNORMAL FLORAL ORGANS); protein binding / transcription factor/ transcription regulator (233 aa)
           
  0.582
Bra003309
AT2G45190 (E=4e-105) AFO, FIL, YAB1 | AFO (ABNORMAL FLORAL ORGANS); protein binding / transcription factor/ transcription regulator (210 aa)
           
  0.558
Bra005177
AT2G37630 (E=1e-161) ATPHAN, AS1, ATMYB91, MYB91 | AS1 (ASYMMETRIC LEAVES 1); DNA binding / protein homodimerization/ transcription factor (361 aa)
           
  0.546
Bra000011
AT2G37630 (E=8e-081) ATPHAN, AS1, ATMYB91, MYB91 | AS1 (ASYMMETRIC LEAVES 1); DNA binding / protein homodimerization/ transcription factor (347 aa)
           
  0.546
ARF3-1
AT2G33860 (E=2e-272) ETT, ARF3 | ETT (ETTIN); DNA binding / transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (605 aa)
           
  0.545
Bra037320
AT4G00180 (E=2e-090) YAB3 | YAB3 (YABBY3); protein binding / transcription factor (238 aa)
           
  0.543
Bra039733
AT1G65620 (E=9e-109) AS2 | AS2 (ASYMMETRIC LEAVES 2); protein binding (202 aa)
           
  0.524
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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