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Bra008616 protein (Brassica rapa) - STRING interaction network
"Bra008616" - AT5G16510 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008616AT5G16510 (E=2e-194) | reversibly glycosylated polypeptide, putative (348 aa)    
Predicted Functional Partners:
Bra027996
AT4G10270 (E=5e-025) | wound-responsive family protein (89 aa)
           
  0.505
Bra027995
AT4G10270 (E=2e-025) | wound-responsive family protein (185 aa)
           
  0.505
Bra027994
AT4G10270 (E=2e-032) | wound-responsive family protein (89 aa)
           
  0.505
Bra018121
AT4G10270 (E=1e-039) | wound-responsive family protein (88 aa)
           
  0.505
Bra010194
AT4G10270 (E=7e-030) | wound-responsive family protein (87 aa)
           
  0.505
Bra022544
AT5G51310 (E=7e-102) | gibberellin 20-oxidase-related (322 aa)
           
  0.483
Bra008683
AT5G15650 (E=4e-212) RGP2, ATRGP2 | RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2); transferase, transferring hexosyl groups (357 aa)
     
0.430
Bra006315
AT5G15650 (E=4e-208) RGP2, ATRGP2 | RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2); transferase, transferring hexosyl groups (363 aa)
     
0.429
Bra027991
AT4G10270 (E=1e-029) | wound-responsive family protein (89 aa)
           
  0.416
Bra008695
AT5G15490 (E=1e-275) | UDP-glucose 6-dehydrogenase, putative (480 aa)
     
   
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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