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Bra008620 protein (Brassica rapa) - STRING interaction network
"Bra008620" - AT5G16480 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008620AT5G16480 (E=2e-098) | tyrosine specific protein phosphatase family protein (207 aa)    
Predicted Functional Partners:
Bra039659
AT1G53190 (E=2e-176) | zinc finger (C3HC4-type RING finger) family protein (460 aa)
           
  0.537
Bra025761
AT1G19720 (E=0.0) | pentatricopeptide (PPR) repeat-containing protein (893 aa)
           
  0.531
Bra025516
AT5G41170 (E=2e-170) | pentatricopeptide (PPR) repeat-containing protein (477 aa)
           
  0.531
Bra024715
AT1G26460 (E=3e-305) | pentatricopeptide (PPR) repeat-containing protein (618 aa)
           
  0.531
Bra009345
AT5G08510 (E=1e-152) | pentatricopeptide (PPR) repeat-containing protein (312 aa)
           
  0.531
Bra040173
AT4G17670 (E=7e-044) | senescence-associated protein-related (152 aa)
       
 
  0.511
Bra024966
AT5G47060 (E=1e-058) | senescence-associated protein-related (177 aa)
       
 
  0.511
Bra022099
AT5G47060 (E=5e-054) | senescence-associated protein-related (182 aa)
       
 
  0.511
Bra037436
AT5G49120 (E=1e-032) | senescence-associated protein-related (136 aa)
           
  0.508
Bra036152
AT5G49120 (E=8e-029) | senescence-associated protein-related (490 aa)
           
  0.508
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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