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Bra008621 protein (Brassica rapa) - STRING interaction network
"Bra008621" - AT5G16470 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008621AT5G16470 (E=3e-054) | zinc finger (C2H2 type) family protein (103 aa)    
Predicted Functional Partners:
Bra035269
AT4G10890 (E=2e-083) | unknown protein (284 aa)
           
  0.666
Bra031016
AT1G18100 (E=1e-096) E12A11 | E12A11; phosphatidylethanolamine binding (173 aa)
           
  0.483
Bra016174
AT1G70920 (E=6e-073) ATHB18 | ATHB18 (Arabidopsis thaliana homeobox-leucine zipper protein 18); DNA binding / transcription factor (209 aa)
           
  0.479
Bra024382
AT5G65410 (E=7e-080) ATHB25, ZFHD2, HB25 | HB25 (HOMEOBOX PROTEIN 25); DNA binding / sequence-specific DNA binding / transcription factor/ transcription regulator (293 aa)
           
  0.477
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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