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Bra008624 protein (Brassica rapa) - STRING interaction network
"Bra008624" - AT5G16320 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008624AT5G16320 (E=1e-107) FRL1 | FRL1 (FRIGIDA LIKE 1) (451 aa)    
Predicted Functional Partners:
Bra023153
AT1G30970 (E=8e-141) SUF4 | SUF4 (suppressor of FRIGIDA4); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor (342 aa)
       
 
  0.741
Bra039880
AT1G30970 (E=3e-081) SUF4 | SUF4 (suppressor of FRIGIDA4); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor (334 aa)
       
 
  0.669
Bra029192
AT4G00650 (E=2e-076) FRI, FLA | FRI (FRIGIDA); protein heterodimerization/ protein homodimerization (587 aa)
       
 
0.601
Bra005468
AT2G33835 (E=5e-149) FES1 | FES1; nucleic acid binding / zinc ion binding (624 aa)
           
  0.579
FRI
AT4G00650 (E=4e-070) FRI, FLA | FRI (FRIGIDA); protein heterodimerization/ protein homodimerization (366 aa)
       
 
  0.558
Bra022568
AT5G51910 (E=1e-098) | TCP family transcription factor, putative (297 aa)
       
      0.489
Bra018126
AT3G47620 (E=2e-126) AtTCP14 | AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14); transcription factor (466 aa)
       
      0.489
Bra020445
AT5G57380 (E=9e-152) VIN3 | VIN3 (VERNALIZATION INSENSITIVE 3); protein binding / zinc ion binding (559 aa)
           
  0.475
Bra028599
AT5G10140 (E=9e-063) FLC, FLF, AGL25 | FLC (FLOWERING LOCUS C); specific transcriptional repressor/ transcription factor (196 aa)
           
  0.473
Bra009055
AT5G10140 (E=4e-063) FLC, FLF, AGL25 | FLC (FLOWERING LOCUS C); specific transcriptional repressor/ transcription factor (206 aa)
           
  0.473
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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