STRINGSTRING
Bra008625 protein (Brassica rapa) - STRING interaction network
"Bra008625" - AT5G16300 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008625AT5G16300 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Vps51/Vps67 (InterPro-IPR014812); Has 204 Blast hits to 183 proteins in 76 species- Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 34; Plants - 24; Viruses - 0; Other Eukaryotes - 19 (source- NCBI BLink). (1066 aa)    
Predicted Functional Partners:
Bra023354
AT5G11980 (E=9e-296) | conserved oligomeric Golgi complex component-related / COG complex component-related (569 aa)
     
  0.972
Bra006136
AT5G11980 (E=2e-158) | conserved oligomeric Golgi complex component-related / COG complex component-related (596 aa)
     
  0.967
Bra023203
AT1G31780 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Conserved oligomeric complex COG6 (InterPro-IPR010490); Has 281 Blast hits to 279 proteins in 131 species- Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 106; Plants - 21; Viruses - 0; Other Eukaryotes - 20 (source- NCBI BLink). (681 aa)
     
  0.952
Bra004269
AT1G67930 (E=0.0) | Golgi transport complex protein-related (825 aa)
     
  0.947
Bra015991
AT1G73430 (E=0.0) | sec34-like family protein (784 aa)
     
  0.942
Bra011848
AT1G62020 (E=1e-278) | coatomer protein complex, subunit alpha, putative (733 aa)
     
 
  0.928
Bra022547
AT5G51430 (E=0.0) EYE | EYE (EMBRYO YELLOW) (829 aa)
     
  0.928
Bra019205
AT4G24840 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- protein transport, Golgi organization; LOCATED IN- vacuole; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- COG complex component, COG2 (InterPro-IPR009316); Has 214 Blast hits to 204 proteins in 99 species- Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 56; Plants - 22; Viruses - 0; Other Eukaryotes - 31 (source- NCBI BLink). (852 aa)
     
  0.925
Bra003542
AT1G79990 (E=0.0) | protein binding / structural molecule (1092 aa)
     
 
    0.924
Bra001616
AT3G15980 (E=1e-093) | coatomer protein complex, subunit beta 2 (beta prime), putative (728 aa)
     
 
  0.923
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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