STRINGSTRING
Bra008628 protein (Brassica rapa) - STRING interaction network
"Bra008628" - AT5G16270 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008628AT5G16270 (E=0.0) ATRAD21.3, SYN4 | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) (1016 aa)    
Predicted Functional Partners:
Bra004420
AT2G47980 (E=0.0) SCC3, ATSCC3 | SCC3 (SISTER-CHROMATID COHESION PROTEIN 3); binding (1523 aa)
     
  0.988
Bra007088
AT3G54670 (E=0.0) TTN8, SMC1, ATSMC1 | TTN8 (TITAN8); ATP binding / transporter (1237 aa)
     
  0.986
Bra034328
AT2G27170 (E=0.0) TTN7, SMC3 | TTN7 (TITAN7); ATP binding / protein binding (1243 aa)
     
  0.984
Bra000522
AT2G27170 (E=1e-200) TTN7, SMC3 | TTN7 (TITAN7); ATP binding / protein binding (1097 aa)
     
  0.984
Bra013254
AT3G54670 (E=5e-291) TTN8, SMC1, ATSMC1 | TTN8 (TITAN8); ATP binding / transporter (1221 aa)
     
  0.984
Bra024922
AT5G47690 (E=0.0) | binding (1625 aa)
     
  0.978
Bra022151
AT5G47690 (E=0.0) | binding (1779 aa)
     
  0.978
Bra023975
AT4G31880 (E=3e-182) | LOCATED IN- cytosol, chloroplast; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; BEST Arabidopsis thaliana protein match is- binding (TAIR-AT1G15940.1); Has 114836 Blast hits to 56273 proteins in 1914 species- Archae - 187; Bacteria - 15478; Metazoa - 53116; Fungi - 16017; Plants - 4342; Viruses - 719; Other Eukaryotes - 24977 (source- NCBI BLink). (979 aa)
     
  0.978
Bra011307
AT4G31880 (E=3e-178) | LOCATED IN- cytosol, chloroplast; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; BEST Arabidopsis thaliana protein match is- binding (TAIR-AT1G15940.1); Has 114836 Blast hits to 56273 proteins in 1914 species- Archae - 187; Bacteria - 15478; Metazoa - 53116; Fungi - 16017; Plants - 4342; Viruses - 719; Other Eukaryotes - 24977 (source- NCBI BLink). (910 aa)
     
  0.978
Bra003586
AT1G80810 (E=1e-085) | binding (684 aa)
     
  0.978
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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