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Bra008629 protein (Brassica rapa) - STRING interaction network
"Bra008629" - AT5G16260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008629AT5G16260 (E=3e-171) | RNA recognition motif (RRM)-containing protein (500 aa)    
Predicted Functional Partners:
Bra037770
AT5G64270 (E=0.0) | splicing factor, putative (1268 aa)
     
 
  0.946
Bra024281
AT5G64270 (E=0.0) | splicing factor, putative (1245 aa)
     
 
  0.946
Bra005605
AT2G32600 (E=2e-111) | hydroxyproline-rich glycoprotein family protein (276 aa)
       
 
  0.938
Bra041053
AT5G41770 (E=3e-066) | crooked neck protein, putative / cell cycle protein, putative (384 aa)
     
 
  0.858
Bra038885
AT5G41770 (E=9e-131) | crooked neck protein, putative / cell cycle protein, putative (318 aa)
     
 
  0.858
Bra038771
AT4G21540 (E=3e-078) SPHK1 | SPHK1 (SPHINGOSINE KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase/ sphinganine kinase (342 aa)
     
 
  0.858
Bra031930
AT5G41770 (E=6e-264) | crooked neck protein, putative / cell cycle protein, putative (667 aa)
     
 
  0.858
Bra028504
AT5G41770 (E=0.0) | crooked neck protein, putative / cell cycle protein, putative (706 aa)
     
 
  0.858
Bra025462
AT5G41770 (E=0.0) | crooked neck protein, putative / cell cycle protein, putative (706 aa)
     
 
  0.858
Bra023285
AT5G45990 (E=7e-019) | crooked neck protein, putative / cell cycle protein, putative (164 aa)
     
 
  0.858
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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