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Bra008642 protein (Brassica rapa) - STRING interaction network
"Bra008642" - AT5G16140 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008642AT5G16140 (E=1e-076) | peptidyl-tRNA hydrolase family protein (161 aa)    
Predicted Functional Partners:
Bra004709
AT2G42580 (E=3e-140) TTL3, VIT | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); binding / protein binding (657 aa)
   
   
  0.713
Bra019830
AT1G11790 (E=3e-196) ADT1 | ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase ; The glycine cleavage system catalyzes the degradation of glycine (1130 aa)
         
  0.695
Bra009383
AT5G09420 (E=2e-282) ATTOC64-V, MTOM64 | ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V); amidase/ binding / carbon-nitrogen ligase, with glutamine as amido-N-donor (923 aa)
       
  0.686
Bra014384
AT3G62910 (E=9e-201) APG3 | APG3 (ALBINO AND PALE GREEN); translation release factor/ translation release factor, codon specific (418 aa)
   
   
  0.654
Bra007712
AT3G62910 (E=3e-195) APG3 | APG3 (ALBINO AND PALE GREEN); translation release factor/ translation release factor, codon specific (417 aa)
   
   
  0.654
Bra004482
AT2G47020 (E=7e-146) | peptide chain release factor, putative (374 aa)
   
   
  0.654
Bra007382
AT3G58140 (E=2e-226) | phenylalanyl-tRNA synthetase class IIc family protein (430 aa)
   
   
  0.644
Bra003322
AT3G58140 (E=4e-232) | phenylalanyl-tRNA synthetase class IIc family protein (426 aa)
   
   
  0.644
Bra031557
AT1G07210 (E=5e-071) | 30S ribosomal protein S18 family (237 aa)
         
  0.639
Bra015562
AT1G07210 (E=8e-078) | 30S ribosomal protein S18 family (279 aa)
         
  0.639
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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