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Bra008644 protein (Brassica rapa) - STRING interaction network
"Bra008644" - AT5G16120 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008644AT5G16120 (E=4e-120) | hydrolase, alpha/beta fold family protein (331 aa)    
Predicted Functional Partners:
Bra035181
AT1G80460 (E=6e-290) NHO1, GLI1 | NHO1 (nonhost resistance to P. s. phaseolicola 1); carbohydrate kinase/ glycerol kinase (522 aa)
       
  0.733
Bra008472
AT1G80460 (E=4e-218) NHO1, GLI1 | NHO1 (nonhost resistance to P. s. phaseolicola 1); carbohydrate kinase/ glycerol kinase (448 aa)
       
  0.733
Bra003567
AT1G80460 (E=1e-289) NHO1, GLI1 | NHO1 (nonhost resistance to P. s. phaseolicola 1); carbohydrate kinase/ glycerol kinase (522 aa)
       
  0.733
Bra001069
AT1G80460 (E=2e-040) NHO1, GLI1 | NHO1 (nonhost resistance to P. s. phaseolicola 1); carbohydrate kinase/ glycerol kinase (300 aa)
       
  0.733
Bra038905
AT3G51520 (E=8e-135) | diacylglycerol acyltransferase family (318 aa)
       
  0.719
Bra012851
AT3G51520 (E=2e-128) | diacylglycerol acyltransferase family (317 aa)
       
  0.719
Bra037017
AT4G33180 (E=1e-154) | hydrolase, alpha/beta fold family protein (304 aa)
       
  0.580
Bra011425
AT4G33180 (E=8e-156) | hydrolase, alpha/beta fold family protein (308 aa)
       
  0.580
Bra019243
AT4G24160 (E=2e-207) | hydrolase, alpha/beta fold family protein (400 aa)
       
  0.570
Bra013770
AT4G24160 (E=6e-213) | hydrolase, alpha/beta fold family protein (407 aa)
       
  0.570
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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