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Bra008651 protein (Brassica rapa) - STRING interaction network
"Bra008651" - AT5G16080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008651AT5G16080 (E=4e-169) AtCXE17 | AtCXE17 (Arabidopsis thaliana carboxyesterase 17); hydrolase (332 aa)    
Predicted Functional Partners:
Bra030752
AT1G09020 (E=1e-112) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (379 aa)
         
  0.848
Bra031991
AT1G66350 (E=3e-153) RGL1, RGL | RGL1 (RGA-LIKE 1); transcription factor (505 aa)
       
  0.690
Bra024875
AT2G01570 (E=6e-207) RGA1, RGA | RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor (573 aa)
       
  0.690
Bra013973
AT5G17490 (E=7e-228) RGL3 | RGL3 (RGA-LIKE PROTEIN 3); transcription factor (525 aa)
       
  0.690
Bra039762
AT1G66350 (E=6e-231) RGL1, RGL | RGL1 (RGA-LIKE 1); transcription factor (488 aa)
       
  0.662
Bra013776
AT4G24210 (E=5e-057) SLY1 | SLY1 (SLEEPY1) (146 aa)
       
 
  0.625
Bra029161
AT2G07340 (E=6e-050) | prefoldin-related KE2 family protein (112 aa)
       
      0.617
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
   
 
  0.604
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
   
 
  0.604
Bra016558
AT1G18360 (E=6e-149) | hydrolase, alpha/beta fold family protein (392 aa)
     
  0.571
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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