STRINGSTRING
Bra008653 protein (Brassica rapa) - STRING interaction network
"Bra008653" - AT5G16060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008653AT5G16060 (E=9e-047) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Cytochrome c oxidase biogenesis protein Cmc1-like (InterPro-IPR013892); Has 47 Blast hits to 47 proteins in 24 species- Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 17; Plants - 21; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (95 aa)    
Predicted Functional Partners:
Bra016268
AT1G69750 (E=1e-049) COX19-2, ATCOX19-2 | cox19 family protein (98 aa)
     
   
  0.519
Bra003982
AT1G69750 (E=6e-045) COX19-2, ATCOX19-2 | cox19 family protein (99 aa)
     
   
  0.519
Bra009679
AT5G23395 (E=1e-049) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; CONTAINS InterPro DOMAIN/s- CHCH (InterPro-IPR010625); Has 224 Blast hits to 224 proteins in 106 species- Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 94; Plants - 20; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (161 aa)
     
 
  0.442
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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