STRINGSTRING
Bra008655 protein (Brassica rapa) - STRING interaction network
"Bra008655" - AT5G16030 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008655AT5G16030 (E=3e-121) | unknown protein (354 aa)    
Predicted Functional Partners:
Bra026511
AT3G25700 (E=3e-207) | chloroplast nucleoid DNA-binding protein-related (451 aa)
           
  0.541
Bra024732
AT1G25682 (E=3e-136) | cell cycle control protein-related (314 aa)
           
  0.541
Bra011006
AT1G25682 (E=1e-132) | cell cycle control protein-related (314 aa)
           
  0.511
Bra025063
AT5G45690 (E=3e-121) | unknown protein (246 aa)
           
  0.478
Bra011754
AT4G37300 (E=5e-067) MEE59 | MEE59 (maternal effect embryo arrest 59) (172 aa)
           
  0.476
Bra014124
AT1G48260 (E=1e-141) CIPK17, SnRK3.21 | CIPK17 (CBL-INTERACTING PROTEIN KINASE 17); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (418 aa)
           
  0.414
Bra033329
AT1G02470 (E=6e-071) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 10 plant structures; EXPRESSED DURING- 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- Streptomyces cyclase/dehydrase (InterPro-IPR005031); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G02475.1); Has 276 Blast hits to 276 proteins in 86 species- Archae - 0; Bacteria - 162; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 85 (source- NCBI BLink). (225 aa)
           
  0.406
Bra032599
AT1G02470 (E=1e-071) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 10 plant structures; EXPRESSED DURING- 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- Streptomyces cyclase/dehydrase (InterPro-IPR005031); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G02475.1); Has 276 Blast hits to 276 proteins in 86 species- Archae - 0; Bacteria - 162; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 85 (source- NCBI BLink). (267 aa)
           
  0.406
Bra019820
AT1G13250 (E=1e-186) GATL3 | GATL3 (Galacturonosyltransferase-like 3); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (342 aa)
           
  0.406
Bra011009
AT1G26110 (E=8e-228) | unknown protein (597 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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