STRINGSTRING
Bra008659 protein (Brassica rapa) - STRING interaction network
"Bra008659" - AT5G16000 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008659AT5G16000 (E=3e-292) NIK1 | NIK1 (NSP-INTERACTING KINASE 1); kinase (634 aa)    
Predicted Functional Partners:
Bra016706
AT1G14320 (E=8e-103) SAC52 | SAC52 (SUPPRESSOR OF ACAULIS 52); structural constituent of ribosome (183 aa)
       
 
  0.940
Bra003984
AT1G66580 (E=3e-101) | 60S ribosomal protein L10 (RPL10C) (184 aa)
       
 
  0.626
Bra009135
AT5G05800 (E=4e-153) | unknown protein (425 aa)
           
  0.504
Bra020201
AT1G27450 (E=4e-069) APT1, ATAPT1 | APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1); adenine phosphoribosyltransferase (198 aa)
           
  0.455
Bra010937
AT1G27450 (E=3e-094) APT1, ATAPT1 | APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1); adenine phosphoribosyltransferase (241 aa)
           
  0.455
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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