STRINGSTRING
Bra008663 protein (Brassica rapa) - STRING interaction network
"Bra008663" - AT5G15900 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008663AT5G15900 (E=6e-173) | unknown protein (328 aa)    
Predicted Functional Partners:
Bra038423
AT1G31430 (E=3e-273) | pentatricopeptide (PPR) repeat-containing protein (561 aa)
           
  0.581
Bra002196
AT5G18950 (E=2e-167) | pentatricopeptide (PPR) repeat-containing protein (502 aa)
           
  0.581
Bra039182
AT3G02560 (E=4e-095) | 40S ribosomal protein S7 (RPS7B) (208 aa)
           
  0.534
Bra021431
AT3G02560 (E=1e-094) | 40S ribosomal protein S7 (RPS7B) (351 aa)
           
  0.534
Bra001052
AT3G02560 (E=3e-094) | 40S ribosomal protein S7 (RPS7B) (191 aa)
           
  0.534
Bra006340
AT5G16130 (E=4e-100) | 40S ribosomal protein S7 (RPS7C) (190 aa)
           
  0.505
Bra035608
AT5G56190 (E=2e-234) | WD-40 repeat family protein (445 aa)
           
  0.449
Bra023553
AT5G16120 (E=6e-166) | hydrolase, alpha/beta fold family protein (554 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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