STRINGSTRING
Bra008664 protein (Brassica rapa) - STRING interaction network
"Bra008664" - AT5G15890 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008664AT5G15890 (E=8e-195) | unknown protein (450 aa)    
Predicted Functional Partners:
Bra035608
AT5G56190 (E=2e-234) | WD-40 repeat family protein (445 aa)
           
  0.532
Bra030842
AT1G55680 (E=2e-233) | WD-40 repeat family protein (448 aa)
           
  0.532
Bra001501
AT3G13340 (E=1e-232) | WD-40 repeat family protein (451 aa)
           
  0.532
Bra038423
AT1G31430 (E=3e-273) | pentatricopeptide (PPR) repeat-containing protein (561 aa)
           
  0.489
Bra002196
AT5G18950 (E=2e-167) | pentatricopeptide (PPR) repeat-containing protein (502 aa)
           
  0.489
Bra015635
AT1G78070 (E=5e-222) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- CUL4 RING ubiquitin ligase complex; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- WD40 repeat-like (InterPro-IPR011046), WD40 repeat, region (InterPro-IPR017986), WD40/YVTN repeat-like (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680); BEST Arabidopsis thaliana protein match is- WD-40 repeat family protein (TAIR-AT1G36070.1); Has 110 Blast hits to 110 proteins in 30 species- Archae - 0; Bacteria - 0; Metazoa - 0; [...] (444 aa)
           
  0.479
Bra033543
AT3G22980 (E=8e-238) | elongation factor Tu family protein (910 aa)
           
  0.478
Bra008585
AT5G16880 (E=2e-188) | VHS domain-containing protein / GAT domain-containing protein (409 aa)
           
  0.478
Bra006377
AT5G16880 (E=1e-185) | VHS domain-containing protein / GAT domain-containing protein (406 aa)
           
  0.478
Bra030137
AT1G35220 (E=0.0) | unknown protein (1000 aa)
           
  0.477
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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