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Bra008669 protein (Brassica rapa) - STRING interaction network
"Bra008669" - AT5G15840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008669AT5G15840 (E=2e-119) CO, FG | CO (CONSTANS); transcription factor/ transcription regulator/ zinc ion binding (366 aa)    
Predicted Functional Partners:
Bra005541
AT2G32950 (E=0.0) COP1, ATCOP1, DET340, FUS1, EMB168 | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase (669 aa)
       
 
  0.938
Bra024536
AT1G22770 (E=0.0) GI, FB | GI (GIGANTEA) (1171 aa)
       
  0.899
Bra010718
AT4G38960 (E=3e-100) | zinc finger (B-box type) family protein (180 aa)
     
 
0.895
Bra017049
AT2G39810 (E=3e-313) HOS1 | HOS1; ubiquitin-protein ligase (940 aa)
       
 
  0.887
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
       
  0.770
Bra004545
AT2G46340 (E=0.0) SPA1 | SPA1 (SUPPRESSOR OF PHYA-105 1); protein binding / signal transducer (1010 aa)
       
 
  0.761
Bra038831
AT2G18915 (E=0.0) LKP2, ADO2 | LKP2 (LOV KELCH PROTEIN 2); protein binding / ubiquitin-protein ligase (616 aa)
       
  0.752
Bra038830
AT2G18915 (E=0.0) LKP2, ADO2 | LKP2 (LOV KELCH PROTEIN 2); protein binding / ubiquitin-protein ligase (617 aa)
       
  0.752
Bra028599
AT5G10140 (E=9e-063) FLC, FLF, AGL25 | FLC (FLOWERING LOCUS C); specific transcriptional repressor/ transcription factor (196 aa)
     
  0.746
Bra009055
AT5G10140 (E=4e-063) FLC, FLF, AGL25 | FLC (FLOWERING LOCUS C); specific transcriptional repressor/ transcription factor (206 aa)
     
  0.746
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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