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Bra008672 protein (Brassica rapa) - STRING interaction network
"Bra008672" - AT5G15810 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008672AT5G15810 (E=1e-135) | N2,N2-dimethylguanosine tRNA methyltransferase family protein (494 aa)    
Predicted Functional Partners:
Bra039889
AT5G15550 (E=1e-024) | transducin family protein / WD-40 repeat family protein (120 aa)
     
        0.969
Bra023524
AT5G15550 (E=4e-208) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
     
        0.969
Bra008691
AT5G15550 (E=7e-209) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
     
        0.969
Bra006306
AT5G15550 (E=2e-204) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
     
        0.969
Bra033094
AT3G12860 (E=4e-163) | nucleolar protein Nop56, putative (445 aa)
 
        0.906
Bra040785
AT1G56110 (E=2e-241) NOP56 | NOP56 (Arabidopsis homolog of nucleolar protein Nop56) (521 aa)
 
        0.904
Bra030816
AT1G56110 (E=7e-238) NOP56 | NOP56 (Arabidopsis homolog of nucleolar protein Nop56) (519 aa)
 
        0.903
Bra001474
AT3G12860 (E=1e-235) | nucleolar protein Nop56, putative (505 aa)
 
        0.902
Bra037373
AT1G56110 (E=2e-022) NOP56 | NOP56 (Arabidopsis homolog of nucleolar protein Nop56) (307 aa)
   
        0.883
Bra034724
AT3G12860 (E=1e-062) | nucleolar protein Nop56, putative (225 aa)
   
        0.883
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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