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Bra008678 protein (Brassica rapa) - STRING interaction network
"Bra008678" - AT5G15760 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008678AT5G15760 (E=6e-074) | plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (179 aa)    
Predicted Functional Partners:
Bra027273
AT3G15190 (E=1e-056) | chloroplast 30S ribosomal protein S20, putative (205 aa)
   
        0.823
Bra021593
AT3G15190 (E=1e-054) | chloroplast 30S ribosomal protein S20, putative (199 aa)
   
        0.805
Bra001587
AT3G15190 (E=9e-058) | chloroplast 30S ribosomal protein S20, putative (201 aa)
   
        0.802
Bra021879
AT2G33800 (E=5e-078) | ribosomal protein S5 family protein (302 aa)
     
   
  0.799
Bra036120
AT5G30510 (E=4e-200) RPS1, ARRPS1 | RPS1 (RIBOSOMAL PROTEIN S1); RNA binding / structural constituent of ribosome (416 aa)
   
      0.760
Bra010018
AT5G30510 (E=2e-213) RPS1, ARRPS1 | RPS1 (RIBOSOMAL PROTEIN S1); RNA binding / structural constituent of ribosome (416 aa)
   
      0.759
Bra000285
AT2G43030 (E=4e-114) | ribosomal protein L3 family protein (266 aa)
     
   
  0.742
Bra007055
AT3G54210 (E=1e-078) | ribosomal protein L17 family protein (208 aa)
     
        0.733
Bra003176
AT3G54210 (E=2e-093) | ribosomal protein L17 family protein (208 aa)
     
        0.733
Bra036763
AT1G35680 (E=2e-076) | 50S ribosomal protein L21, chloroplast / CL21 (RPL21) (203 aa)
     
   
  0.719
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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