STRINGSTRING
Bra008679 protein (Brassica rapa) - STRING interaction network
"Bra008679" - AT5G15740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008679AT5G15740 (E=8e-266) | unknown protein (509 aa)    
Predicted Functional Partners:
Bra040646
AT3G05320 (E=6e-165) | unknown protein (339 aa)
           
  0.483
Bra036124
AT5G28910 (E=7e-266) | unknown protein (533 aa)
           
  0.483
Bra010015
AT5G28910 (E=1e-269) | unknown protein (540 aa)
           
  0.483
Bra034487
AT1G62305 (E=1e-165) | unknown protein (373 aa)
           
  0.403
Bra016802
AT1G11940 (E=5e-184) | unknown protein (376 aa)
           
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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