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Bra008681 protein (Brassica rapa) - STRING interaction network
"Bra008681" - AT5G15700 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008681AT5G15700 (E=1e-084) | DNA-directed RNA polymerase (RPOT2) (491 aa)    
Predicted Functional Partners:
Bra032652
AT1G01860 (E=6e-151) PFC1 | PFC1 (PALEFACE 1); mRNA (2’-O-methyladenosine-N6-)-methyltransferase (588 aa)
     
  0.674
Bra012062
AT5G66360 (E=1e-115) | ribosomal RNA adenine dimethylase family protein (359 aa)
     
  0.674
Bra004458
AT2G47420 (E=4e-161) | dimethyladenosine transferase, putative (345 aa)
     
  0.674
Bra000452
AT2G47420 (E=7e-162) | dimethyladenosine transferase, putative (342 aa)
     
  0.674
Bra031473
AT2G35630 (E=2e-020) MOR1, GEM1 | MOR1 (MICROTUBULE ORGANIZATION 1); microtubule binding (133 aa)
       
      0.613
Bra023018
AT2G35630 (E=0.0) MOR1, GEM1 | MOR1 (MICROTUBULE ORGANIZATION 1); microtubule binding (1960 aa)
       
      0.613
Bra005318
AT2G35630 (E=0.0) MOR1, GEM1 | MOR1 (MICROTUBULE ORGANIZATION 1); microtubule binding (1984 aa)
       
      0.613
Bra038010
AT1G55650 (E=2e-071) | high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (324 aa)
         
  0.603
Bra035256
AT4G23800 (E=2e-069) | high mobility group (HMG1/2) family protein (433 aa)
         
  0.603
Bra034683
AT3G13350 (E=1e-054) | high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (300 aa)
         
  0.603
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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