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Bra008685 protein (Brassica rapa) - STRING interaction network
"Bra008685" - AT3G02180 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008685AT3G02180 (E=1e-014) SP1L3 | SP1L3 (SPIRAL 1-LIKE3) (129 aa)    
Predicted Functional Partners:
Bra029831
AT3G10340 (E=0.0) PAL4 | PAL4 (Phenylalanine ammonia-lyase 4); ammonia ligase/ ammonia-lyase/ catalytic (706 aa)
       
      0.909
Bra003126
AT3G53260 (E=0.0) PAL2, ATPAL2 | PAL2; phenylalanine ammonia-lyase (707 aa)
       
      0.909
Bra017210
AT2G37040 (E=0.0) pal1, ATPAL1 | pal1 (Phe ammonia lyase 1); phenylalanine ammonia-lyase (722 aa)
       
      0.898
Bra039777
AT3G53260 (E=4e-169) PAL2, ATPAL2 | PAL2; phenylalanine ammonia-lyase (510 aa)
       
      0.612
Bra030322
AT5G04230 (E=0.0) PAL3, ATPAL3 | PAL3 (PHENYL ALANINE AMMONIA-LYASE 3); phenylalanine ammonia-lyase (698 aa)
       
      0.612
Bra028793
AT5G04230 (E=1e-044) PAL3, ATPAL3 | PAL3 (PHENYL ALANINE AMMONIA-LYASE 3); phenylalanine ammonia-lyase (294 aa)
       
      0.612
Bra006985
AT3G53260 (E=0.0) PAL2, ATPAL2 | PAL2; phenylalanine ammonia-lyase (706 aa)
       
      0.612
Bra005221
AT2G37040 (E=6e-113) pal1, ATPAL1 | pal1 (Phe ammonia lyase 1); phenylalanine ammonia-lyase (371 aa)
       
      0.612
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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