STRINGSTRING
Bra008689 protein (Brassica rapa) - STRING interaction network
"Bra008689" - AT5G15580 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008689AT5G15580 (E=0.0) LNG1 | LNG1 (LONGIFOLIA1) (896 aa)    
Predicted Functional Partners:
Bra006332
AT5G15880 (E=3e-142) | unknown protein (345 aa)
           
  0.499
Bra004128
AT1G65780 (E=2e-264) | tRNA-splicing endonuclease positive effector-related (1015 aa)
           
  0.477
Bra010062
AT5G62170 (E=5e-249) | unknown protein (706 aa)
     
   
  0.451
Bra036598
AT5G26910 (E=2e-207) | unknown protein (814 aa)
           
  0.449
Bra011058
AT4G28760 (E=3e-208) | unknown protein (837 aa)
           
  0.449
Bra002072
AT2G17550 (E=3e-314) | unknown protein (768 aa)
           
  0.449
Bra007599
AT3G61380 (E=3e-119) | unknown protein (629 aa)
           
  0.414
Bra003143
AT3G53540 (E=1e-211) | unknown protein (891 aa)
           
  0.414
Bra039541
AT4G15520 (E=1e-119) | tRNA/rRNA methyltransferase (SpoU) family protein (220 aa)
           
  0.412
Bra012782
AT4G15520 (E=2e-118) | tRNA/rRNA methyltransferase (SpoU) family protein (220 aa)
           
  0.412
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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