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Bra008690 protein (Brassica rapa) - STRING interaction network
"Bra008690" - AT5G15570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008690AT5G15570 (E=8e-132) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Bromodomain transcription factor (InterPro-IPR006565); BEST Arabidopsis thaliana protein match is- DNA binding (TAIR-AT3G02160.1); Has 143 Blast hits to 143 proteins in 37 species- Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 8 (source- NCBI BLink). (362 aa)    
Predicted Functional Partners:
Bra035499
AT1G32750 (E=0.0) HAF01, HAF1, HAC13, GTD1, TAF1 | HAF01; DNA binding / histone acetyltransferase (1893 aa)
       
  0.976
Bra033338
AT1G02680 (E=8e-052) TAF13 | TAF13 (TBP-ASSOCIATED FACTOR 13); DNA binding / RNA polymerase II transcription factor (128 aa)
       
  0.974
Bra030508
AT1G02680 (E=7e-051) TAF13 | TAF13 (TBP-ASSOCIATED FACTOR 13); DNA binding / RNA polymerase II transcription factor (128 aa)
       
  0.974
Bra011293
AT4G31720 (E=7e-066) TAFII15, STG1 | TAFII15 (TBP-ASSOCIATED FACTOR II 15); RNA polymerase II transcription factor/ transcription factor (134 aa)
       
  0.974
Bra010224
AT4G31720 (E=2e-064) TAFII15, STG1 | TAFII15 (TBP-ASSOCIATED FACTOR II 15); RNA polymerase II transcription factor/ transcription factor (134 aa)
       
  0.974
Bra035961
AT5G43130 (E=0.0) TAF4, TAF4B | TAF4 (TBP-ASSOCIATED FACTOR 4); transcription initiation factor (779 aa)
       
  0.973
Bra033662
AT5G43130 (E=5e-162) TAF4, TAF4B | TAF4 (TBP-ASSOCIATED FACTOR 4); transcription initiation factor (771 aa)
       
  0.973
Bra030061
AT1G27720 (E=3e-132) TAF4, TAF4B | TAF4B (TBP-ASSOCIATED FACTOR 4B); transcription initiation factor (803 aa)
       
  0.973
Bra034092
AT3G10070 (E=1e-029) TAF12, TAFII58 | TAF12 (TBP-ASSOCIATED FACTOR 12); DNA binding / transcription initiation factor (269 aa)
       
  0.965
Bra030989
AT1G17440 (E=8e-071) EER4, TAF12B | EER4 (ENHANCED ETHYLENE RESPONSE 4); DNA binding / transcription initiation factor (609 aa)
       
  0.965
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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