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Bra008700 protein (Brassica rapa) - STRING interaction network
"Bra008700" - AT5G15400 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008700AT5G15400 (E=0.0) | U-box domain-containing protein (1041 aa)    
Predicted Functional Partners:
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
     
  0.986
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
     
  0.986
Bra005748
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1349 aa)
     
  0.986
Bra037281
AT2G17200 (E=4e-207) | ubiquitin family protein (542 aa)
     
  0.964
Bra009657
AT2G17200 (E=6e-206) | ubiquitin family protein (552 aa)
     
  0.964
Bra022366
AT3G18860 (E=0.0) | transducin family protein / WD-40 repeat family protein (760 aa)
     
 
  0.956
Bra001726
AT3G18860 (E=3e-271) | transducin family protein / WD-40 repeat family protein (744 aa)
     
 
  0.956
Bra015052
AT3G24530 (E=2e-260) | AAA-type ATPase family protein / ankyrin repeat family protein (482 aa)
     
  0.954
Bra040419
AT3G63000 (E=7e-209) NPL41 | NPL41 (NPL4-LIKE PROTEIN 1) (413 aa)
     
 
  0.953
Bra003519
AT3G63000 (E=2e-024) NPL41 | NPL41 (NPL4-LIKE PROTEIN 1) (89 aa)
     
 
  0.953
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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