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Bra008712 protein (Brassica rapa) - STRING interaction network
"Bra008712" - AT5G15210 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008712AT5G15210 (E=3e-084) ATHB30, ZFHD3 | ATHB30 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 30); DNA binding / transcription factor (263 aa)    
Predicted Functional Partners:
Bra016924
AT2G41620 (E=0.0) | nucleoporin interacting component family protein (863 aa)
       
      0.905
Bra026812
AT1G14687 (E=2e-072) AtHB32 | AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32); DNA binding / transcription factor (172 aa)
       
 
0.653
Bra028528
AT2G18196 (E=1e-096) | metal ion binding (178 aa)
       
      0.615
Bra012882
AT3G50890 (E=4e-075) AtHB28 | AtHB28 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 28); DNA binding / transcription factor (265 aa)
       
 
0.437
Bra037919
AT4G10465 (E=2e-081) | metal ion binding (182 aa)
       
      0.418
Bra015857
AT1G75240 (E=2e-093) AtHB33 | AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33); DNA binding / transcription factor (302 aa)
       
 
0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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