STRINGSTRING
Bra008716 protein (Brassica rapa) - STRING interaction network
"Bra008716" - AT5G15160 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008716AT5G15160 (E=2e-035) | bHLH family protein (94 aa)    
Predicted Functional Partners:
Bra018572
AT1G09250 (E=2e-061) | transcription factor (205 aa)
       
 
  0.454
Bra040253
AT3G05800 (E=8e-067) | transcription factor (198 aa)
       
 
  0.426
Bra040278
AT3G06590 (E=9e-070) | transcription factor (223 aa)
       
 
  0.424
Bra029590
AT3G06590 (E=2e-059) | transcription factor (234 aa)
       
 
  0.424
Bra036922
AT4G15030 (E=7e-087) | unknown protein (241 aa)
           
  0.416
Bra016960
AT2G40935 (E=2e-089) | unknown protein (193 aa)
           
  0.408
Bra023510
AT5G15190 (E=3e-026) | unknown protein (120 aa)
           
  0.406
Bra006288
AT5G15190 (E=1e-028) | unknown protein (115 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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