STRINGSTRING
Bra008720 protein (Brassica rapa) - STRING interaction network
"Bra008720" - AT5G15120 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008720AT5G15120 (E=3e-122) | unknown protein (307 aa)    
Predicted Functional Partners:
Bra039181
AT3G02570 (E=3e-217) MEE31, PMI1 | MEE31 (MATERNAL EFFECT EMBRYO ARREST 31); mannose-6-phosphate isomerase (433 aa)
           
  0.445
Bra034030
AT1G67070 (E=4e-210) DIN9, PMI2 | DIN9 (DARK INDUCIBLE 9); mannose-6-phosphate isomerase (444 aa)
           
  0.445
Bra021430
AT3G02570 (E=2e-220) MEE31, PMI1 | MEE31 (MATERNAL EFFECT EMBRYO ARREST 31); mannose-6-phosphate isomerase (432 aa)
           
  0.445
Bra013763
AT4G24110 (E=7e-075) | unknown protein (247 aa)
     
   
  0.421
Bra023304
AT1G33055 (E=2e-019) | unknown protein (66 aa)
     
   
  0.418
Bra023304.1-P
AT1G33055 (E=2e-019) | unknown protein (66 aa)
     
   
  0.418
Bra037131
AT5G66985 (E=2e-027) | unknown protein (87 aa)
     
   
  0.415
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [HD]