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Bra008722 protein (Brassica rapa) - STRING interaction network
"Bra008722" - AT5G15100 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008722AT5G15100 (E=6e-158) PIN8 | PIN8 (PIN-FORMED 8); auxin-hydrogen symporter/ transporter ; May act as a component of the auxin efflux carrier (341 aa)    
Predicted Functional Partners:
Bra013162
AT2G06210 (E=3e-294) ELF8, VIP6 | ELF8 (EARLY FLOWERING 8); binding (1051 aa)
           
  0.532
Bra005252
AT2G36710 (E=2e-178) | pectinesterase family protein (406 aa)
           
  0.532
Bra004927
AT2G45650 (E=5e-070) AGL6 | AGL6 (AGAMOUS-LIKE 6); DNA binding / transcription factor (242 aa)
           
  0.532
Bra000392
AT2G45650 (E=3e-114) AGL6 | AGL6 (AGAMOUS-LIKE 6); DNA binding / transcription factor (257 aa)
           
  0.532
Bra007419
AT3G58780 (E=2e-116) SHP1, AGL1 | SHP1 (SHATTERPROOF 1); DNA binding / protein binding / transcription factor (245 aa)
           
  0.483
Bra004928
AT2G45660 (E=6e-082) AGL20, SOC1 | AGL20 (AGAMOUS-LIKE 20); transcription factor (213 aa)
           
  0.422
Bra000393
AT2G45660 (E=6e-092) AGL20, SOC1 | AGL20 (AGAMOUS-LIKE 20); transcription factor (213 aa)
           
  0.422
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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