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Bra008731 protein (Brassica rapa) - STRING interaction network
"Bra008731" - AT5G14930 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008731AT5G14930 (E=1e-171) SAG101 | SAG101 (SENESCENCE-ASSOCIATED GENE 101); carboxylesterase/ triacylglycerol lipase (712 aa)    
Predicted Functional Partners:
Bra033775
AT3G48090 (E=3e-194) EDS1 | EDS1 (enhanced disease susceptibility 1); lipase/ signal transducer/ triacylglycerol lipase (600 aa)
       
 
0.924
Bra018085
AT3G48080 (E=1e-188) | lipase class 3 family protein / disease resistance protein-related (600 aa)
       
 
0.924
Bra033774
AT3G48080 (E=1e-185) | lipase class 3 family protein / disease resistance protein-related (592 aa)
       
 
0.924
Bra027690
AT1G64280 (E=2e-195) NPR1, SAI1, NIM1, ATNPR1 | NPR1 (NONEXPRESSER OF PR GENES 1); protein binding / transcription activator (570 aa)
           
  0.414
Bra008165
AT1G74710 (E=6e-286) EDS16, ICS1, SID2 | isochorismate synthase 1 (ICS1) / isochorismate mutase (564 aa)
           
  0.414
Bra003789
AT1G74710 (E=2e-264) EDS16, ICS1, SID2 | isochorismate synthase 1 (ICS1) / isochorismate mutase (567 aa)
           
  0.414
Bra039976
AT2G29350 (E=5e-120) SAG13 | SAG13; alcohol dehydrogenase/ oxidoreductase (271 aa)
           
  0.406
Bra027599
AT5G45250 (E=0.0) RPS4 | RPS4 (RESISTANT TO P. SYRINGAE 4); receptor (1198 aa)
           
  0.406
Bra011768
AT4G37460 (E=0.0) SRFR1 | SRFR1 (SUPPRESSOR OF RPS4-RLD 1); protein complex scaffold (1034 aa)
           
  0.406
Bra036087
AT3G50470 (E=1e-073) HR3, MLA10 | HR3 (HOMOLOG OF RPW8 3) (215 aa)
     
   
  0.402
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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