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Bra008747 protein (Brassica rapa) - STRING interaction network
"Bra008747" - AT5G14660 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Bra008747AT5G14660 (E=3e-123) PDF1B, DEF2, ATDEF2 | PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase ; Removes the formyl group from the N-terminal Met of newly synthesized proteins (277 aa)    
Predicted Functional Partners:
Bra040811
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (802 aa)
   
 
  0.926
Bra032735
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (792 aa)
   
 
  0.926
Bra024017
AT4G31210 (E=0.0) | DNA topoisomerase family protein ; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (1177 aa)
   
   
  0.733
Bra011253
AT4G31210 (E=0.0) | DNA topoisomerase family protein ; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (1189 aa)
   
   
  0.733
Bra009383
AT5G09420 (E=2e-282) ATTOC64-V, MTOM64 | ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V); amidase/ binding / carbon-nitrogen ligase, with glutamine as amido-N-donor (923 aa)
   
 
  0.727
Bra019830
AT1G11790 (E=3e-196) ADT1 | ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase ; The glycine cleavage system catalyzes the degradation of glycine (1130 aa)
   
 
  0.684
Bra037787
AT5G64650 (E=2e-068) | ribosomal protein L17 family protein (160 aa)
     
 
  0.682
Bra014830
AT3G54210 (E=4e-015) | ribosomal protein L17 family protein (113 aa)
     
 
  0.682
Bra007055
AT3G54210 (E=1e-078) | ribosomal protein L17 family protein (208 aa)
     
 
  0.682
Bra006032
AT5G09770 (E=1e-077) | ribosomal protein L17 family protein (159 aa)
     
 
  0.682
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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