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Bra008748 protein (Brassica rapa) - STRING interaction network
"Bra008748" - AT5G14650 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008748AT5G14650 (E=3e-139) | polygalacturonase, putative / pectinase, putative (439 aa)    
Predicted Functional Partners:
Bra022440
AT3G19620 (E=1e-244) | glycosyl hydrolase family 3 protein (771 aa)
         
  0.919
Bra031771
AT1G11580 (E=2e-238) ATPMEPCRA, PMEPCRA | PMEPCRA (METHYLESTERASE PCR A); enzyme inhibitor/ pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (452 aa)
       
  0.833
Bra035579
AT5G55590 (E=2e-150) QRT1 | QRT1 (QUARTET 1); pectinesterase (378 aa)
       
  0.824
Bra002891
AT5G55590 (E=1e-097) QRT1 | QRT1 (QUARTET 1); pectinesterase (409 aa)
       
  0.824
Bra033083
AT3G29090 (E=1e-184) PME31, ATPME31 | pectinesterase family protein (317 aa)
       
  0.820
Bra025376
AT3G29090 (E=2e-186) PME31, ATPME31 | pectinesterase family protein (317 aa)
       
  0.820
Bra034140
AT3G10720 (E=6e-297) | pectinesterase, putative (613 aa)
       
  0.799
Bra009406
AT5G04970 (E=2e-279) | pectinesterase, putative (640 aa)
       
  0.799
Bra005833
AT5G04970 (E=8e-279) | pectinesterase, putative (593 aa)
       
  0.799
Bra020658
AT5G49180 (E=4e-237) | pectinesterase family protein ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (570 aa)
       
  0.797
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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